projects

Projects

Open-source tools, packages, and platforms for genomics, neuroscience data, and reproducible research. Search or sort, then tap any card for the full story.

ABCD Data Dictionary Chatbot

A Shiny app that lets researchers search the ABCD data dictionary with natural-language semantic queries.

R
Python
Shiny

ABCDscores

An R package that computes the official summary scores for the ABCD Study’s tabulated data resource.

R
ABCD
Neuroimaging

DEAP

A web platform for exploring, building, and analyzing datasets from the ABCD and HBCD studies.

Data engineering
ABCD
HBCD

drawer

A browser-based interactive image editing and annotation tool for assembling scientific figures.

JavaScript
R
Shiny

NBDCtools

A metadata-driven R and Python toolkit that turns downloaded NBDC/ABCD releases into analysis-ready datasets.

R
Python
ABCD

Rare Cancer Explorer

A dedicated database and analytical web platform that integrates multi-omics data for rare cancers.

R
Shiny
Cancer genomics

spatialHeatmap

An R/Bioconductor package and Shiny app that maps assay values onto anatomical images for spatial context.

R
Bioconductor
Visualization

spsComps

A collection of custom Shiny UI and server components that help developers build richer, more interactive apps.

R
Shiny
JavaScript

spsUtil

A lightweight R package of general-purpose utility functions for logging, error handling, and everyday tasks.

R
Shiny
Utilities

SVIV

An R package that integrates and visualizes somatic structural variants merged from multiple WGS callers.

R
Cancer genomics
Structural variants

systemPipeR

An R/Bioconductor workflow environment that unifies R analytics with command-line tools for reproducible data analysis.

R
Bioconductor
Workflows

systemPipeShiny

A Shiny GUI framework that brings systemPipeR workflow management and data visualization to non-programmers.

R
Shiny
Workflows